PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G355100.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 442aa    MW: 49182 Da    PI: 7.5746
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G355100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM113.91.7e-35441861128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.... 77 
                         lp+G++F+Ptd+el+ e+L++kv+++       +++  +i+++d    i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+    
  Brast01G355100.2.p  44 LPAGVKFDPTDQELI-EHLEAKVREEGsrshplIDE--FIPTIDgedgICYTHPEKLP-GVTMDGLSKHFFHRPSKAYTTGTRKRRKiqte 130
                         799************.99******999667544333..3444433445**********.455567899******************75666 PP

                 NAM  78 ....tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                               + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Brast01G355100.2.p 131 cdvqKGETRWHKTGKTRPVMA-GGRQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 186
                         664433778************.99************5547999999*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.37E-4039205IPR003441NAC domain
PROSITE profilePS5100534.3644205IPR003441NAC domain
PfamPF023653.2E-1645186IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MNSRGHISSS ELIDAKLEEH RISTARHCPN CRHKLDCKPD WLGLPAGVKF DPTDQELIEH  60
LEAKVREEGS RSHPLIDEFI PTIDGEDGIC YTHPEKLPGV TMDGLSKHFF HRPSKAYTTG  120
TRKRRKIQTE CDVQKGETRW HKTGKTRPVM AGGRQKGCKK ILVLYTNFGK HRKPEKTNWV  180
MHQYHLGDLE EEREGELVVC KIFYQTQPRQ CSWTATTGSG AAAAAAATHQ LQLQEQRRRD  240
STGSGSSSSR DHEAPVPYPA GAAGYAVAAA VEMQHLKHAA AAGDHFSFAP FRKSFEEVGG  300
IGGDQVPSDQ LGRSEPHLAG QEQQPHRPVL ATTAVPATAF LVSRPTNPVS ATVPPPMQHT  360
SVVLDHDQQF HVPAIFLHHD KFQNMQQQQQ QKIDHRRSAG LEELIRGCTS ACTKGETSIS  420
QSQETEWPYP YWPPDNQDHH G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-134220313166Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0617160.0AK061716.1 Oryza sativa Japonica Group cDNA clone:001-037-H07, full insert sequence.
GenBankAK1061520.0AK106152.1 Oryza sativa Japonica Group cDNA clone:001-207-H11, full insert sequence.
GenBankEU5414720.0EU541472.1 Oryza sativa Japonica Group cultivar Dongjin NAC-type transcription factor (NAC075) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564693.10.0PREDICTED: uncharacterized protein LOC100823359 isoform X2
TrEMBLI1HCV90.0I1HCV9_BRADI; Uncharacterized protein
STRINGBRADI2G05700.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-113NAC domain containing protein 75